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2023

• Mafakheri H, Taghavi SM, Zarei S, Portier P, Dimkić I, Koebnik R, Kuzmanović N, Osdaghi E. 2023. Xanthomonas bonasiae sp. nov. and Xanthomonas youngii sp. nov., isolated from crown gall tissues. Int. J. Syst. Evol. Microbiol., in press. doi: 10.1099/ijsem.0.005418
• Peduzzi C, Sagia A, Burokiene D, Nagy IK, Fischer-Le Saux M, Portier P, Dereeper A, Cunnac S, Roman-Reyna V, Jacobs J, Bragard C, Koebnik R. 2023. Complete genome sequencing of three clade-1 xanthomonads reveals genetic determinants for a lateral flagellin and the biosynthesis of coronatine-like molecules in Xanthomonas. Phytopathology, in press. doi: 10.1094/PHYTO-10-22-0373-SC
• Dupas E, Durand K, Rieux A, Briand M, Pruvost O, Cunty A, Denancé N, Donnadieu C, Legendre B, Lopez-Roques C, Cesbron S, Ravigné V, Jacques MA. 2023. Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France. Commun. Biol. 6: 103. doi: 10.1038/s42003-023-04499-6
• Zárate-Chaves CA, Audran C, Medina Culma CA, Escalon A, Javegny S, Gagnevin L, Thomas E, Pimparé LL, López CE, Jacobs JM, Noël LD, Koebnik R, Bernal AJ, Szurek B. 2023. CRISPRi in Xanthomonas demonstrates functional convergence of Transcription Activator-Like effectors in two divergent pathogens. New Phytol., in press. doi: 10.1111/nph.18808

2022

• Clavijo F, Barrera C, Benčič A, Croce V, Jacobs JM, Bernal AJ, Koebnik R, Roman-Reyna V. 2022. Complete genome sequence resource for Xanthomonas translucens pv. undulosa MAI5034, a wheat pathogen from Uruguay. Phytopathology 112: 2036-2039. doi: 10.1094/PHYTO-01-22-0025-A
• Dia NC,  Morinière L, Cottyn B, Bernal E, Jacobs JM, Koebnik R, Osdaghi E, Potnis N, Pothier JF. 2022. Xanthomonas hortorum – beyond gardens: Current taxonomy, genomics, and virulence repertoires. Mol. Plant Pathol. 23: 597-621. doi: 10.1111/mpp.13185
• Díaz-Tatis PA, Ochoa JC, Rico EM, Rodríguez C, Medina A, Szurek B, Chavarriaga P, López CE. 2022. RXam2, a NLR from cassava (Manihot esculenta) contributes partially to the quantitative resistance to Xanthomonas phaseoli pv. manihotis. Plant Mol. Biol. 109: 313-324. doi: 10.1007/s11103-021-01211-2
• Doucouré H, Auguy F, Blanvillain-Baufumé S, Fabre S, Gabriel M, Thomas E, Dambreville F, Sciallano C, Szurek B, Koita O, Verdier V, Cunnac S. 2022. The rice ILI2 locus is a bidirectional target of the African Xanthomonas oryzae pv. oryzae major transcription activator-like effector TalC but does not contribute to disease susceptibility. Int. J. Mol. Sci. 23: 5559. doi: 10.3390/ijms23105559
• Dubrow ZE, Carpenter SCD, Carter ME, Grinage A, Gris C, Lauber E, Butchachas J, Jacobs JM, Smart CD, Tancos MA, Noël LD, Bogdanove AJ. 2022. Cruciferous Weed Isolates of Xanthomonas campestris Yield Insight into Pathovar Genomic Relationships and Genetic Determinants of Host and Tissue Specificity. Mol. Plant Microbe Interact. 35: 791-802. doi: 10.1094/MPMI-01-22-0024-R
• Erken Meral S, Bibi S, Díaz Rodríguez CA, Menković J, Bernal AJ, Koebnik R. 2022. Complete genome sequence of Xanthomonas campestris pv. campestris SB80, a race 4 strain isolated from white head cabbage in Turkey. Microbiol. Resour. Announc. 11: e0002222. doi: 10.1128/mra.00022-22
• Goettelmann F, Roman-Reyna V, Cunnac S, Jacobs JM, Bragard C, Studer B, Koebnik R, Kölliker R. 2022. Complete genome assemblies of all Xanthomonas translucens pathotype strains reveal three genetically distinct clades. Front. Microbiol. 12: 817815. doi: 10.3389/fmicb.2021.817815
• Mafakheri H, Taghavi SM, Zarei S, Rahimi T, Hasannezhad MS, Portier P, Fischer-Le Saux M, Dimkić I, Koebnik R, Kuzmanović N, Osdaghi E. 2022. Phenotypic and molecular-phylogenetic analyses reveal distinct features of crown gall-associated Xanthomonas strains. Microbiol. Spectr. 10: e0057721. doi: 10.1128/spectrum.00577-21
• Tall H, Lachaux M, Diallo A, Wonni I, Tekete C, Verdier V, Szurek B, Hutin M. 2022. Confirmation report of bacterial leaf streak disease of rice caused by Xanthomonas oryzae pv. oryzicola in Senegal. Plant Dis. 106: 2253. doi: 10.1094/PDIS-11-21-2481-PDN
• Zarei S, Taghavi SM, Rahimi T, Mafakheri H, Potnis N, Koebnik R, Fischer-Le Saux M, Pothier JF, Palacio Bielsa A, Cubero J, Portier P, Jacques MA, Osdaghi E. 2022. Taxonomic refinement of Xanthomonas arboricola. Phytopathology 112: 1630-1639. doi: 10.1094/PHYTO-12-21-0519-R

2021

• Catara V, Cubero J, Pothier JF, Bosis E, Bragard C, Đermić E, Holeva MC, Jacques MA, Petter F, Pruvost O, Robène I, Studholme DJ, Tavares F, Vicente JG, Koebnik R, Costa J. 2021. Trends in Molecular Diagnosis and Diversity Studies for Phytosanitary Regulated Xanthomonas. Microorganisms 9: 862. doi: 10.3390/microorganisms9040862
• Costa J, Pothier JF, Boch J, Stefani E, Jacques MA, Catara V, Koebnik R. 2021. Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe. Mol. Plant Pathol. 22: 1461-1463. doi: 10.1111/mpp.13150
• Koebnik R, Burokiene D, Bragard C, Chang C, Saux MF, Kölliker R, Lang JM, Leach JE, Luna EK, Portier P, Sagia A, Ziegle J, Cohen SP, Jacobs JM. 2021. The Complete Genome Sequence of Xanthomonas theicola, the Causal Agent of Canker on Tea Plants, Reveals Novel Secretion Systems in Clade-1 Xanthomonads. Phytopathology 111: 611-616. doi: 10.1094/PHYTO-07-20-0273-SC
• Campos PE, Groot Crego C, Boyer K, Gaudeul M, Baider C, Richard D, Pruvost O, Roumagnac P, Szurek B, Becker N, Gagnevin L, Rieux A. 2021. First historical genome of a crop bacterial pathogen from herbarium specimen: Insights into citrus canker emergence. PLoS Pathog. 17: e1009714. doi: 10.1371/journal.ppat.1009714
• Diallo A, Zougrana S, Sawadogo M, Kone D, Silué D, Szurek B, Wonni I, Hutin M. 2021. First Report of Bacterial Leaf Streak Disease of Rice Caused by Xanthomonas oryzae pv. oryzicola in Ivory Coast. Plant Dis. 105: 4147. doi: 10.1094/PDIS-04-21-0811-PDN
• Zárate-Chaves CA, Gómez de la Cruz D, Verdier V, López CE, Bernal A, Szurek B. 2021. Cassava diseases caused by Xanthomonas phaseoli pv. manihotis and Xanthomonas cassavae. Mol. Plant Pathol. 22: 1520-1537. doi: 10.1111/mpp.13094
• Zárate-Chaves CA, Osorio-Rodríguez D, Mora RE, Pérez-Quintero ÁL, Dereeper A, Restrepo S, López CE, Szurek B, Bernal A. 2021. TAL Effector Repertoires of Strains of Xanthomonas phaseoli pv. manihotis in Commercial Cassava Crops Reveal High Diversity at the Country Scale. Microorganisms 9: 315. doi: 10.3390/microorganisms9020315
• Román-Reyna V, Dupas E, Cesbron S, Marchi G, Campigli S, Hansen MA, Bush E, Prarat M, Shiplett K, Lewis Ivey ML, Pierzynski J, Miller SA, Hand FP, Jacques MA, Jacobs JM. 2021 Metagenomic sequencing for identification of Xylella fastidiosa from leaf samples. mSystems 6: e0059121. doi: 10.1101/2021.05.12.443947
• Pruvost O, Richard D, Boyer K, Javegny S, Boyer C, Chiroleu F, Grygiel P, Parvedy E, Robène I, Maillot-Lebon V, Hamza A, Lobin KK, Naiken M, Vernière C. 2021. Diversity and geographical structure of Xanthomonas citri pv. citri on citrus in the South West Indian Ocean region. Microorganisms 9: 945. doi: 10.3390/microorganisms9050945

2020

• Cohen SP, Luna EK, Lang JM, Ziegle J, Chang C, Leach JE, Fischer-Le Saux M, Portier P, Koebnik R, Jacobs JM. 2020. High-quality genome resource of Xanthomonas hyacinthi generated via long-read sequencing. Plant Disease 104: 1011-1012. DOI: 10.1094/pdis-11-19-2393-a
• Gerlin L, Cottret L, Cesbron S, Taghouti G, Jacques M-A, Genin S, Baroukh C. 2020. Genome-scale investigation of the metabolic determinants generating bacterial fastidious growth. mSystems 5: e00698-19. DOI: 10.1128/mSystems.00698-19
• Cohen SP, Luna EK, Lang JM, Ziegle J, Chang C, Leach JE, Le-Saux MF, Portier P, Koebnik R, Jacobs JM. 2020. High-Quality Genome Resource of Xanthomonas hyacinthi Generated via Long-Read Sequencing. Plant Dis. 104: 1011-1012. doi: 10.1094/PDIS-11-19-2393-A
• Gluck-Thaler E, Cerutti A, Perez-Quintero AL, Butchacas J, Roman-Reyna V, Madhavan VN, Shantharaj D, Merfa MV, Pesce C, Jauneau A, Vancheva T, Lang JM, Allen C, Verdier V, Gagnevin L, Szurek B, Beckham GT, De La Fuente L, Patel HK, Sonti RV, Bragard C, Leach JE, Noël LD, Slot JC, Koebnik R, Jacobs JM. 2020. Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles. Sci. Adv. 6: eabc4516. doi: 10.1126/sciadv.abc4516
• Robène I, Maillot-Lebon V, Chabirand A, Moreau A, Becker N, Moumène A, Rieux A, Campos P, Gagnevin L, Gaudeul M, Baider C, Chiroleu F, Pruvost O. 2020. Development and comparative validation of genomic-driven PCR-based assays to detect Xanthomonas citri pv. citri in citrus plants. BMC Microbiol. 20: 296. doi: 10.1186/s12866-020-01972-8
• Morinière L, Burlet A, Rosenthal ER, Nesme X, Portier P, Bull CT, Lavire C, Fischer-Le Saux M, Bertolla F. 2020. Clarifying the taxonomy of the causal agent of bacterial leaf spot of lettuce through a polyphasic approach reveals that Xanthomonas cynarae Trébaol et al. 2000 emend. Timilsina et al. 2019 is a later heterotypic synonym of Xanthomonas hortorum Vauterin et al. 1995. Syst. Appl. Microbiol. 43: 126087. doi: 10.1016/j.syapm.2020.126087
• Tekete C, Cunnac S, Doucouré H, Dembele M, Keita I, Sarra S, Dagno K, Koita O, Verdier V. 2020. Characterization of New Races of Xanthomonas oryzae pv. oryzae in Mali Informs Resistance Gene Deployment. Phytopathology 110: 267-277. doi: 10.1094/PHYTO-02-19-0070-R
• Foucher J, M Ruh, A Préveaux, S Carrère, S Pelletier, M Briand, R-F Serre, M-A Jacques, NWG Chen. 2020. Common bean resistance to Xanthomonas is associated with upregulation of the salicylic acid pathway and downregulation of photosynthesis. BMC Genomics 21: 566. doi: 10.1186.s12864-020-06972-6
• Perez-Quintero AL, Ortiz-Castro M, Lang J, Rieux A, Wu G, Liu S, Chapman TA, Chang C, Ziegle J, Peng Z, White FF, Plazas MC, Leach J, Broders K. 2020. Genomic acquisitions in emerging populations of Xanthomonas vasicola pv. vasculorum infecting corn in the U.S. and Argentina. Phytopathology 110: 1161-1173. doi: 10.1094/PHYTO-03-19-0077-R

2019

• Jeong K, Muñoz-Bodnar A, Arias Rojas N, Poulin L, Rodriguez-R LM, Gagnevin L, Vernière C, Pruvost O, Koebnik R. 2019. CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen Xanthomonas citri pv. citri. BMC Genomics 20: 917. DOI: 10.1186/s12864-019-6267-z
• Rache L, Blondin L, Flores C, Trujillo C, Szurek B, Restrepo S, Koebnik R, Bernal A, Vernière C. 2019. An optimized microsatellite scheme for assessing populations of Xanthomonas phaseoli pv. manihotis. Phytopathology 109: 859-869. DOI: 10.1094/PHYTO-06-18-0210-R
• Pruvost O, Boyer K, Ravigné V, Richard D, Vernière C. 2019. Deciphering how plant pathogenic bacteria disperse and meet: molecular epidemiology of Xanthomonas citri pv. citri at microgeographic scales in a tropical area of Asiatic citrus canker endemicity. Evol. Appl. 12: 1523-1538. DOI: 10.1111/eva.12788
• Flores C, Zarate C, Triplett L, Maillot-Lebon V, Moufid Y, Kanté M, Bragard C, Verdier V, Gagnevin L, Szurek B, Robène I. 2019. Development of a duplex-PCR for differential diagnosis of Xanthomonas phaseoli pv. manihotis and Xanthomonas cassavae in cassava (Manihot esculenta). Physiol. Mol. Plant Pathol. 105: 34-46. DOI: 10.1016/j.pmpp.2018.07.005

2018

• Bartoli C, Frachon L, Barret M, Rigal M, Huard-Chauveau C, Mayjonade B, Zanchetta C, Bouchez O, Roby D, Carrere S, Roux F. 2018. In situ relationships between microbiota and potential pathobiota in Arabidopsis thaliana. ISME J. 12: 2024-2038. DOI: 10.1038/s41396-018-0152-7
• Chen NWG, Serres-Giardi L, Ruh M, Briand M, Bonneau S, Darrasse A, Barbe V, Gagnevin L, Koebnik R, Jacques M-A. 2018. Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean. BMC Genomics 19: 606. DOI: 10.1186/s12864-018-4975-4
• Denancé N, Szurek B, Doyle E, Lauber E, Fontaine-Bodin L, Carrère S, Guy E, Hajri A, Cerutti A, Boureau T, Poussier S, Arlat M, Bogdanove A, Noël L. 2018. Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire. New Phytologist 219: 391-407. DOI: 10.1111/nph.15148

2017

• Osdaghi E, Forero Serna N, Bolot S, Fischer-Le Saux M, Jacques MA, Portier P, Carrère S, Koebnik R. 2017. High-quality draft genome sequence of Curtobacterium sp. strain Ferrero. Genome Announc. 5: e01378-17. DOI: 10.1128/genomeA.01378-17
• Richard D, Boyer C, Lefeuvre P, Canteros BI, Beni-Madhu S, Portier P, Pruvost O. 2017. Complete genome sequences of six copper-resistant Xanthomonas strains causing bacterial spot of solaneous plants, belonging to X. gardneri, X. euvesicatoria, and X. vesicatoria, using long-read technology. Genome Announc. 5: e01693-01616. DOI: 10.1128/genomeA.01693-16
• Richard D, Ravigné V, Rieux A, Facon B, Boyer C, Boyer K, Grygiel P, Javegny S, Terville M, Canteros BI, Robène I, Vernière C, Chabirand A, Pruvost O, Lefeuvre P. 2017. Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements. Mol. Ecol. 26: 2131-2149. DOI: 10.1111/mec.14007
• Zombre C, Wonni I, Ouedraogo L, Kpemoua KE, Assignon K, Sankara P, Vernière C, Boyer C, Boyer K, Javegny S, Pruvost O. 2017. First report of Xanthomonas citri pv. mangiferaeindicae causing mango bacterial canker on Mangifera indica L. in Togo. Plant Dis. 101: 503. DOI: 10.1094/PDIS-09-16-1259-PDN
• Richard D, Boyer C, Verniere C, Canteros BI, Lefeuvre P, Pruvost O. 2017. Complete genome sequences of six copper-resistant Xanthomonas citri pv. citri strains causing Asiatic citrus canker, obtained using long-read technology. Genome Announc. 5: e00010-00017. DOI: 10.1128/genomeA.00010-17